Tutorials

First steps

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First steps with Jupyter Notebook

Jupyter Notebook

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First steps with 3D analysis of sequential DNA-FISH data

pyHiM in 3D

Advanced

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Full test in CLI

Test installation

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How to customise settings

Parameters file

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Running Cellpose to create 3D masks

Cellpose for pyHiM

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Create your model for the segmentation (masks and spots)

StarDist for pyHiM