toolbox.file_handling package#
Submodules#
toolbox.file_handling.cleanHiM_run module#
Created on Sat May 2 17:16:07 2020
@author: marcnol
cleans directory structure
In the command line, run as $ cleanHiM_run.py
to erase all the directories produced recursively
and
$ cleanHiM_run.py –all
to erase also the output MD, Log, and Session files
- toolbox.file_handling.cleanHiM_run.main()#
toolbox.file_handling.lndir module#
Created on Fri Oct 16 23:56:27 2020
@author: marcnol
make links of files in a directory to a second directory
In the command line, run as
Example:
$ lndir.py “/home/marcnol/Repositories/pyHiM/*py” ~/Downloads/test
Make sure that the first argument has quotation marks if you use wildcards!
- toolbox.file_handling.lndir.main()#
toolbox.file_handling.unzipHiM_run module#
Created on Wed May 5 13:50:54 2021
@author: marcnol
unzips HiM_run.tar.gz recursively
In the command line, run as $ unzipHiM_run.py
to unzip all the directories recursively
- toolbox.file_handling.unzipHiM_run.main()#
toolbox.file_handling.zipHiM_run module#
Created on Sun May 3 11:14:47 2020
@author: marcnol
zips all png, MD and output files from a HiM run. It excludes .npy and Tiff images.
In the command line, run as $ zipHiM_run.py
to zip all the directories recursively
- toolbox.file_handling.zipHiM_run.main()#