toolbox package

Submodules

toolbox.imagePreProcessing module

Created on Sun Feb 28 13:44:47 2021

@author: marcnol

  • loads a list of images from a folder

  • re-scales exposures

  • removes inhomogeneous background

  • adjusts image levels

  • saves output in TIF

Steps:
  • defines run_parameters

  • gets list of images in folder using wildcard, *tif by default

  • loads iteratively images and applies operations described above

  • saves output

toolbox.imagePreProcessing.lauch_dask_scheduler(requested_nb_nodes, maximum_load=0.6, memory_per_worker=2000)
toolbox.imagePreProcessing.main()
toolbox.imagePreProcessing.parse_arguments()

toolbox.imageSegmentSpots module

Module contents