API Reference#
- pyHiM main
- core package
- imageProcessing package
- Submodules
- imageProcessing.alignImages module
- imageProcessing.alignImages3D module
- imageProcessing.imageProcessing module
- imageProcessing.localization_table module
- imageProcessing.makeProjections module
- imageProcessing.segmentMasks module
- imageProcessing.segmentMasks3D module
- imageProcessing.segmentSources3D module
- Module contents
- matrixOperations package
- plots package
- postProcessing package
- Submodules
- postProcessing.analyze_localizations module
- postProcessing.compare_PWD_matrices module
- postProcessing.mask_cellpose module
- postProcessing.mask_manual module
- postProcessing.npy_to_tiff module
- postProcessing.processHiMmatrix module
- postProcessing.pwd_matrix_2_pdb module
- postProcessing.trace_analyzer module
- postProcessing.trace_assign_mask module
- postProcessing.trace_combinator module
- postProcessing.trace_filter module
- postProcessing.trace_filter_advanced module
- postProcessing.trace_merge module
- postProcessing.trace_plot module
- postProcessing.trace_to_matrix module
- Module contents
- toolbox package
- toolbox.file_handling package
- toolbox.parameter_file package