localize_3d#

Segments sources in 3D

Invoke#

Inside the folder with your input data, run:

pyhim -C localize_3d

localization

Inputs#

Name shape

Quantity

Mandatory

Description

parameters.json

1

Yes

Parameter file.

<image_name>.tif

2..n

Yes

3D images

Outputs#

Name shape

Quantity

Description

3D_segmented_barcode.ecsv

1