localize_3d

Segments sources in 3D

Invoke

Inside the folder with your input data, run:

pyhim -C localize_3d

Inputs

Name shape	Quantity	Mandatory	Description
parameters.json	1	Yes	Parameter file.
<image_name>.tif	2..n	Yes	3D images

Outputs

Name shape	Quantity	Description
3D_segmented_barcode.ecsv	1